Package: BcDiag 1.0.10

BcDiag: Diagnostics Plots for Bicluster Data

Diagnostic tools based on two-way anova and median-polish residual plots for Bicluster output obtained from packages; "biclust" by Kaiser et al.(2008),"isa2" by Csardi et al. (2010) and "fabia" by Hochreiter et al. (2010). Moreover, It provides visualization tools for bicluster output and corresponding non-bicluster rows- or columns outcomes. It has also extended the idea of Kaiser et al.(2008) which is, extracting bicluster output in a text format, by adding two bicluster methods from the fabia and isa2 R packages.

Authors:Aregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer

BcDiag_1.0.10.tar.gz
BcDiag_1.0.10.zip(r-4.5)BcDiag_1.0.10.zip(r-4.4)BcDiag_1.0.10.zip(r-4.3)
BcDiag_1.0.10.tgz(r-4.4-any)BcDiag_1.0.10.tgz(r-4.3-any)
BcDiag_1.0.10.tar.gz(r-4.5-noble)BcDiag_1.0.10.tar.gz(r-4.4-noble)
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BcDiag.pdf |BcDiag.html
BcDiag/json (API)

# Install 'BcDiag' in R:
install.packages('BcDiag', repos = c('https://ewouddt.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • breastc - Gene Expression Data Example
  • dlbcl - Gene Expression Data Example

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

5 exports 0.49 score 3 dependencies 1 dependents 452 downloads

Last updated 9 years agofrom:d6a7bb1811. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 09 2024
R-4.5-winOKSep 09 2024
R-4.5-linuxOKSep 09 2024
R-4.4-winOKSep 09 2024
R-4.4-macOKSep 09 2024
R-4.3-winOKSep 09 2024
R-4.3-macOKSep 09 2024

Exports:anomedOnlybicexploreBicexploreOnlybicprofileBicwriteBic

Dependencies:BiobaseBiocGenericsfabia