Package: BiBitR 0.4.2

BiBitR: R Wrapper for Java Implementation of BiBit

A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <doi:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.

Authors:De Troyer Ewoud

BiBitR_0.4.2.tar.gz
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BiBitR.pdf |BiBitR.html✨
BiBitR/json (API)

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Bug tracker:https://github.com/ewouddt/bibitr/issues

On CRAN:

18 exports 1 stars 1.27 score 52 dependencies 2 dependents 18 scripts 418 downloads

Last updated 6 years agofrom:e5fde22dcb. Checks:OK: 1 WARNING: 6. Indexed: yes.

Exports:bibitbibit_columnextensionbibit2bibit3bibit3_patternBCBiBitWorkflowClusterRowCoverageColInfoColNoiseBCCompareResultJIExactFisherBCmake_arff_row_colMaxBCNoiseInfoBCNoiseScreeRowTest_FishersummaryUpdateBiclust_RowNoise

Dependencies:additivityTestsbiclustclasscliclustercolorspacecpp11curldendextenddplyrfansifarverflexclustforeigngenericsggplot2gluegridExtragtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmodeltoolsmunsellnlmepillarpkgconfigpurrrR6randomcoloRRColorBrewerRcpprlangRtsnescalesstringistringrtibbletidyrtidyselectutf8V8vctrsviridisviridisLitewithr